Have you ever heard of walking catfish?
These are fish that will pull themselves across dry land to get to new bodies of water. They are fish that are adapted to temporarily survive on land.
How about lungfish? Fish that can actually breath oxygen. They actually breath air.
You are talking about just any fish. What you need to imagine is a fish that has adaptations that allow it to survive on land and away from the water. The first species probably could only survive a short amount of time on land but the species evolved into one that could last longer and longer until it no longer needed to live in the water. It is an incredible niche to fill. Lots of food and at the time few predators.
Ok, so you are saying that the fish portion of your claim is not important. However, more than half of your original question was devoted to it. You speak of holes in the theory but also say that you are uneducated about all of this. Why do you think there are holes in the theory if you are uneducated about it? Can you give examples of some of these other problems? Please do not toss out the thermodynamics problems that some people say are holes in the theory. The theories concerning thermodynamics deal with closed systems and Earth is not a closed system. There are many natural processes that will organize matter rather than make it more disorganized. Life in general is an example of this. So, please discuss your other problems with the theory of evolution. Maybe we can clarify things.
Regarding one of you additional detail remarks
"nobody is actually answering my real question here...
how does the one fish that adapts spread its seed to the other fish? its the only one and will die off long before another one comes around"
The fish did not just one day go from water to land. You would have had fish that would go up on land to take advantage of resources there. They would be like the walking catfish or mudskippers. They live in the water but have evolved an ability to survive out of the water for short periods of time. Their reproduction still happens in the water. These animals will go on land and then return to the water. After enough time the fish evolve to be able to survive longer periods of time on land. After awhile you will have a creature that is mostly a land animal but does spend quite a bit of time in the water, such as an amphibian. It was not an overnight thing.
Another reply to an additional detail remark.
"call me stupid, but if a guy writes a book about how life began after looking at a few cells, and then another dude and his buddy parts the sea and cures peoples horrible diseases... i am inclined to tell Poindexter to shove his book you know where..."
You had asked people to treat you nicely. Some people might have responded to you poorly but if you want nice treatment then you need to keep your own remarks civil. I think there is a book somewhere that says something like "Do onto others as you would have done onto you".
Another reply to an additional detail remark
"also, i am fairly uneducated on the subject so please be nice...
what i am really looking for is an explanation as to why anyone would accept a theory with so many HUGE holes and gaps, especially when it can't actually be recreated in a lab (i don't mean adaptation, i mean REALLY big changes in physiology as described in he theory)"
Umm, actually science can replicate evolution. Scientists have been working with E. coli bacteria since 1988. There have been over 44,000 generations of bacteria. The bacteria of today is different from the bacteria they started with. In fact, they created a new strain that could eat citrate. Normally, E. coli cannot do that. Over 44,000 generations a new strain developed that can eat citrate. The bacteria evolved to take advantage of this. From the research the scientists have learned that it was not just a single mutation that allowed this to happen but a series of mutation over the generations.
http://scienceblogs.com/loom/2008/06/02/a_new_step_in_evolution.php
Why science cannot do this with something a bit more complex such as mice? Notice that it said 44,000 generations. A mouse can hit breeding age in 25-40 days. Gestation is around 20 days. So lets say 45 days from birth to birth of offspring. That would take 5,424 years to get 44,000 generations. That is under optimal conditions mind you. In the wild it would take much longer. Bacteria breed much faster and results can be seen much quicker. More complex life forms will need thousands of years to get noticeable results.